S3method(ALLEXTID,Reactome)
S3method(EXTID2TERMID,Reactome)
S3method(TERM2NAME,Reactome)
S3method(TERMID2EXTID,Reactome)
S3method(getGeneSet,Reactome)
export(enrichPathway)
export(gseAnalyzer)
export(viewPathway)
importClassesFrom(DOSE,enrichResult)
importClassesFrom(DOSE,gseaResult)
importFrom(AnnotationDbi,as.list)
importFrom(DOSE,ALLEXTID)
importFrom(DOSE,EXTID2NAME)
importFrom(DOSE,EXTID2TERMID)
importFrom(DOSE,TERM2NAME)
importFrom(DOSE,TERMID2EXTID)
importFrom(DOSE,enrich.internal)
importFrom(DOSE,getALLEG)
importFrom(DOSE,getGeneSet)
importFrom(DOSE,gsea)
importFrom(DOSE,netplot)
importFrom(DOSE,scaleNodeColor)
importFrom(DOSE,setReadable)
importFrom(DOSE,setting.graph.attributes)
importFrom(graphite,convertIdentifiers)
importFrom(graphite,pathwayGraph)
importFrom(igraph,igraph.from.graphNEL)
importFrom(org.Hs.eg.db,org.Hs.egSYMBOL)
importFrom(reactome.db,reactomeEXTID2PATHID)
importFrom(reactome.db,reactomePATHID2EXTID)
importFrom(reactome.db,reactomePATHID2NAME)
importMethodsFrom(AnnotationDbi,mappedkeys)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(DOSE,plot)
importMethodsFrom(DOSE,show)
importMethodsFrom(DOSE,summary)
