Package: RTN
Type: Package
Title: Reconstruction of transcriptional networks and analysis of
        master regulators
Version: 1.0.0
Date: 2013-10-05
Author: Mauro Castro, Xin Wang, Michael Fletcher, Florian Markowetz and Kerstin Meyer
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Depends: R (>= 2.15), methods, igraph
Imports: minet, snow, limma, RedeR (>= 1.8.1)
Suggests: HTSanalyzeR, RUnit, BiocGenerics
Description: This package provides classes and methods for transcriptional network inference and analysis. Modulators of transcription factor activity are assessed by conditional mutual information, and master regulators are mapped to phenotypes using different strategies, e.g., gene set enrichment, shadow and synergy analyses.
License: Artistic-2.0
biocViews: NetworkInference, NetworkAnalysis, NetworkEnrichment,
        GeneRegulation, GeneExpression, GraphsAndNetworks
URL: http://dx.doi.org/10.1038/ncomms3464
Collate: ClassUnions.R AllChecks.R AllClasses.R AllGenerics.R
        AllSupplements.R AllPlots.R TNA-methods.R TNI-methods.R
LazyLoad: yes
Packaged: 2013-10-15 08:24:19 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 16:02:21 UTC; windows
