Summary,peRes-method    Summarize the results of a Pathway-Express
                        analysis
alpha1MR                Compute alpha weights
alphaMLG                Compute alpha weights
compute.fisher          Combine independent p-values using the Fisher
                        method
compute.normalInv       Combine independent p-values using the normal
                        inversion method
keggPathwayGraphs       Download and parse KEGG pathway data
keggPathwayNames        Obtain KEGG pathway titles
nodeWeights             Retrieve the node weights of a graph
pe                      Pathway-Express: Pathway analysis of signaling
                        pathways
peEdgeRenderInfo        Extract edge render information from a
                        'pePathway' object
peNodeRenderInfo        Extract node render information from a
                        'pePathway' object
pePathway               Class that encodes the result of
                        Pathway-Express for a single pathway
peRes                   Pathway-Express result class
plot.pePathway          Plot pathway level statistics
plot.peRes              Plot Pathway-Express result
setEdgeWeights          Set gene weights based on edge type
setNodeWeights          Set node weights
