useDynLib("QuasR", .registration=TRUE)

import(methods)
import(zlibbioc)

import(BiocGenerics)
importFrom(BiocInstaller, biocLite)
import(IRanges)
importFrom(Biobase, createPackage, testBioCConnection)
import(Biostrings)
import(GenomicRanges)
import(BSgenome)
import(Rsamtools)
import(ShortRead)
import(GenomicFeatures)

exportClasses(qProject)

exportMethods(length, genome, auxiliaries, alignments, "[", show)

export(qAlign, qCount, preprocessReads, qExportWig, qQCReport, qMeth, alignmentStats, qProfile)
