Package: PWMEnrich
Imports: seqLogo, gdata, evd
Maintainer: Robert Stojnic <robert.stojnic@gmail.com>
License: GPL-3
Title: PWM enrichment analysis
Type: Package
LazyLoad: yes
Author: Robert Stojnic, Diego Diez
Description: A toolkit of high-level functions for DNA motif scanning and
    enrichment analysis built upon Biostrings. The main functionality is PWM
    enrichment analysis of already known PWMs (e.g. from databases such as
    MotifDb), but the package also implements high-level functions for PWM
    scanning and visualisation. The package does not perform "de novo" motif
    discovery, but is instead focused on using motifs that are either
    experimentally derived or computationally constructed by other tools.
Version: 2.6.2
biocViews: Bioinformatics, SequenceMatching, GenomicSequence, Software
Date: 2013-12-05
Depends: methods, grid, BiocGenerics, Biostrings,
Suggests: MotifDb, BSgenome.Dmelanogaster.UCSC.dm3,
        PWMEnrich.Dmelanogaster.background, testthat, gtools, parallel
Collate: 'AllDataClasses.R' 'AllGenerics.R' 'background.R' 'clover.R'
        'diff.R' 'misc.R' 'MotifEnrichmentResults-methods.R'
        'MotifEnrichmentReport-methods.R' 'options.R' 'plot.R'
        'PWMBackground-methods.R' 'PWM-methods.R' 'pwm.R' 'readData.R'
        'seqLogoSupp.R' 'similarity.R'
Packaged: 2013-12-06 09:07:49 UTC; biocbuild
Built: R 3.0.2; ; 2013-12-06 16:48:47 UTC; windows
