Package: PADOG
Version: 1.4.0
Date: 2012-09-10
Title: Pathway Analysis with Down-weighting of Overlapping Genes
        (PADOG)
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Depends: R (>= 2.14.0), KEGGdzPathwaysGEO, graphics, limma,
        AnnotationDbi, Biobase, methods, nlme, GSA,KEGG.db
Suggests: parallel
Maintainer: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Description: This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.  
License: GPL (>= 2)
URL:
biocViews: Microarray, OneChannel, TwoChannel, Bioinformatics
Collate: padog.R compPADOG.R filteranot.R
Imports: graphics, limma, hgu133plus2.db, hgu133a.db, KEGG.db,
        AnnotationDbi, Biobase, methods, nlme
LazyLoad: yes
Packaged: 2013-10-15 08:07:18 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 15:41:10 UTC; windows
