Package: MEDIPS
Type: Package
Title: (MeD)IP-seq data analysis
Version: 1.12.0
Date: 2013-07-09
Author: Lukas Chavez, Matthias Lienhard, Joern Dietrich
Maintainer: Lukas Chavez <lchavez@liai.org>
Description: MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). 
	However, MEDIPS provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including
	calculation of differential coverage between groups of samples as well as saturation and correlation analyses.
License: GPL (>=2)
LazyLoad: yes
biocViews: Sequencing, DNAMethylation, CpGIsland,
        DifferentialExpression, HighThroughputSequencing, ChIPseq,
        Preprocessing, QualityControl, Visualization
Depends: R (>= 3.0), BSgenome, DNAcopy
Imports: Biostrings, BSgenome, Rsamtools, graphics, gtools, IRanges,
        methods, stats, utils, GenomicRanges, edgeR, GenomicFeatures,
        DNAcopy, biomaRt, rtracklayer
Suggests: BSgenome, BSgenome.Hsapiens.UCSC.hg19, MEDIPSData
Packaged: 2013-10-15 07:36:57 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 15:34:45 UTC; windows
