AlignedPairs	AlignedPairs
AlignNetworks	AlignNetworks
AnalyzeAlignment	AnalyzeAlignment
ComputeLinkParameters	ComputeLinkParameters
ComputeM	ComputeM
ComputeNodeParameters	ComputeNodeParameters
ComputeScores	ComputeScores
CreateScoreMatrix	CreateScoreMatrix
EncodeDirectedGraph	EncodeDirectedGraph
GenerateExample	GenerateExample
GetBinNumber	GetBinNumber
InitialAlignment	InitialAlignment
InvertPermutation	InvertPermutation
LinearAssignment	LinearAssignment
MatrixToBin	MatrixToBin
Permute	Permute
Trace	Trace
VectorToBin	VectorToBin
