Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data

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Documentation for package ‘GeneNetworkBuilder’ version 1.4.1

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buildNetwork construct the regulatory network
ce.IDsMap map file for converting gene name or sequence name of _Caenorhabditis elegans_ to wormbase identifier
ce.interactionmap transcript regulatory map of _Caenorhabditis elegans_
ce.mapIDs map file for converting from wormbase identifier to _Caenorhabditis elegans_ gene name
ce.miRNA.map micro RNA of _Caenorhabditis elegans_
convertID convert gene IDs by id map
example.data example datasets for documentation
filterNetwork filter the regulatory network table by expression profile
hs.IDsMap map file for converting gene name or sequence name of _Homo sapiens_ to Entrez identifier
hs.interactionmap transcript regulation map of _Homo sapiens_
hs.mapIDs map file for converting from Entrez identifier to _Homo sapiens_ gene name
hs.miRNA.map micro RNA of _Homo sapiens_
polishNetwork generate an object of grahpNEL to represent the regulation network
uniqueExprsData unique the microarray data