S3method(ALLEXTID,DO)
S3method(EXTID2TERMID,DO)
S3method(TERM2NAME,DO)
S3method(TERMID2EXTID,DO)
S3method(barplot,enrichResult)
S3method(fortify,enrichResult)
S3method(fortify,gseaResult)
S3method(getGeneSet,DO)
export(ALLEXTID)
export(EXTID2NAME)
export(EXTID2TERMID)
export(TERM2NAME)
export(TERMID2EXTID)
export(doSim)
export(enrich.internal)
export(enrichDO)
export(geneSim)
export(getALLEG)
export(getGeneSet)
export(gseAnalyzer)
export(gsea)
export(gseaplot)
export(netplot)
export(scaleNodeColor)
export(setReadable)
export(setting.graph.attributes)
export(simplot)
export(theme_dose)
exportClasses(enrichResult)
exportClasses(gseaResult)
exportMethods(cnetplot)
exportMethods(plot)
exportMethods(show)
exportMethods(summary)
importClassesFrom(methods,data.frame)
importFrom(DO.db,DOANCESTOR)
importFrom(DO.db,DOOFFSPRING)
importFrom(DO.db,DOPARENTS)
importFrom(DO.db,DOTERM)
importFrom(GOSemSim,combineScores)
importFrom(GOSemSim,getDb)
importFrom(GOSemSim,getSupported_Org)
importFrom(GOSemSim,termSim)
importFrom(ggplot2,"%+%")
importFrom(ggplot2,"%+replace%")
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,fortify)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(graphics,barplot)
importFrom(grid,grid.layout)
importFrom(grid,grid.newpage)
importFrom(grid,pushViewport)
importFrom(grid,viewport)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,degree)
importFrom(igraph,graph.data.frame)
importFrom(igraph,layout.fruchterman.reingold)
importFrom(igraph,plot.igraph)
importFrom(igraph,tkplot)
importFrom(methods,new)
importFrom(methods,show)
importFrom(parallel,detectCores)
importFrom(parallel,mclapply)
importFrom(plyr,.)
importFrom(plyr,dlply)
importFrom(plyr,ldply)
importFrom(qvalue,qvalue)
importFrom(reshape2,melt)
importFrom(scales,cscale)
importFrom(scales,seq_gradient_pal)
importFrom(stats4,plot)
importFrom(stats4,summary)
importMethodsFrom(AnnotationDbi,columns)
importMethodsFrom(AnnotationDbi,exists)
importMethodsFrom(AnnotationDbi,get)
importMethodsFrom(AnnotationDbi,keys)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(AnnotationDbi,select)
importMethodsFrom(AnnotationDbi,toTable)
importMethodsFrom(DO.db,Term)
