Package: DOSE
Type: Package
Title: Disease Ontology Semantic and Enrichment analysis
Version: 2.0.0
Author: Guangchuang Yu, Li-Gen Wang
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin
    and Wang respectively for measuring DO semantic similarities, and
    hypergeometric test for enrichment analysis.
Depends: R (>= 2.10), ggplot2
Imports: methods, plyr, qvalue, stats4, AnnotationDbi, DO.db,
        org.Hs.eg.db, igraph, scales, reshape2, graphics, GOSemSim,
        grid
Suggests: clusterProfiler, ReactomePA, knitr
VignetteBuilder: knitr
License: Artistic-2.0
biocViews: Bioinformatics, Annotation
Collate: 'AllGenerics.R' 'barplot.R' 'cnetplot.R' 'DOSE-package.R'
        'doSim.R' 'enrich.internal.R' 'enrichDO.R' 'geneSim.R' 'gsea.R'
        'simplot.R' 'utilities.R' 'zzz.R' 'gseAnalyzer.R'
Packaged: 2013-10-15 07:42:54 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 15:09:35 UTC; windows
