CNVrd2-class            Class '"CNVrd2"'
CNVrd2-package          CNVrd2
calculateLDSNPandCNV    calculateLDSNPandCNV
ccl3l1data              Data of CCL3L1 gene (The 1000 Genomes Project)
clusteringCNVs-class    Class '"clusteringCNVs"'
countReadInWindow       Obtain read counts in constant windows.
countReadInWindow-methods
                        Method 'countReadInWindow'
emnormalCNV             Implement the EM algorithm
emnormalCNV-methods     Method 'emnormalCNV'
fcgr3bMXL               MXL population data (The 1000 Genomes Project)
groupBayesianCNVs       groupBayesianCNVs
groupCNVs               Cluster segmentation scores into groups.
groupCNVs-methods       Method 'groupCNVs'
identifyPolymorphicRegion
                        Identity polymorphic regions.
identifyPolymorphicRegion-methods
                        Methods for Function
                        'identifyPolymorphicRegion'
numericOrNULL-class     Class '"numericOrNULL"'
plotCNVrd2              Plot traces of samples.
plotCNVrd2-methods      Method 'plotCNVrd2'
plotPolymorphicRegion   Plot polymorphic regions.
plotPolymorphicRegion-methods
                        Methods for Function 'plotPolymorphicRegion'
searchGroupCNVs         Choose a number of CN groups
searchGroupCNVs-methods
                        Method 'searchGroupCNVs'
segmentSamples          Implement the segmentation process
segmentSamples-methods
                        Method 'segmentSamples'
segmentSamplesUsingPopInformation
                        Implement the segmentation process for multiple
                        populations
segmentSamplesUsingPopInformation-methods
                        Method 'segmentSamplesUsingPopInformation'
vectorORfactor-class    Class '"vectorORfactor"'
