CGEN                    An R package for analysis of case-control
                        studies in genetic epidemiology
LocusMapData            Locus map data
QQ.plot                 QQ plot
SNPdata                 Sample genotype data
Xdata                   Sample covariate and outcome data
additive.test           A test for gene-environment interaction under
                        an additive risk model for case-control data
chromosome.plot         Chromosome plot
getMatchedSets          Case-Control and Nearest-Neighbor Matching
getSummary              Compute summary information
getWaldTest             Compute a Wald test
locusMap.list           List to describe the locus map data
pheno.list              List to describe the covariate and outcome data
printEffects            Print an effects table
recode.geno             Recode a vector of genotypes
sas.list                List for SAS data sets
snp.effects             Joint and Stratified Effects
snp.effects.plot        Effects plot
snp.list                List to describe the genotype data
snp.logistic            Logistic regression analysis for a single SNP
snp.matched             Robust G-G and G-E Interaction with
                        Finely-Matched Case-Control Data.
snp.scan.logistic       Logistic regression analysis for an array of
                        SNPs
