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| virtualArray-package | Combine raw data of several ExpressionSets into a "virtual array". |
| GPLs | Provides precompiled mappings of NCBI GEO platform IDs (GPLs) to Bioconductor annotation packages. |
| normalize.ExpressionSet.gq | gene quantiles normalization |
| normalize.ExpressionSet.mc | mean centering normalization |
| normalize.ExpressionSet.mrs | median rank scores normalization |
| normalize.ExpressionSet.nordi | normal discretization normalization |
| normalize.ExpressionSet.qd | quantile discretization normalization |
| sample_info_imported | sample_info data.frame object |
| virtualArray | Combine raw data of several ExpressionSets into a "virtual array". |
| virtualArrayBuildExprs | Format ExpressionSets as data.frames with identifiers in first column |
| virtualArrayBuildfData | Collapses expression values according to given identifiers |
| virtualArrayBuildSampleInfo | Build data.frame suitable as "pData" for several ExpressionSets |
| virtualArrayComBat | Removes batch effects from microarray derived expression matrices. Modified version. |
| virtualArrayComBat-method | Removes batch effects from microarray derived expression matrices. Modified version. |
| virtualArrayCompile | Compiles a single virtual array holding user provided microarray data from multiple platforms. |
| virtualArrayDirs | Build virtualArray directory structure to hold raw data of multiple microarray chips |
| virtualArrayExpressionSets | Combine different ExpressionSets into one |
| virtualArrayHclust | Plot a hclust object with colored labels |
| virtualArrayLoadRaw | Load user provided raw data files in the virtualArray directory structure |
| virtualArrayMergeRecurse | Merge a list of data.frames by common rows |