Package: phyloseq
Version: 1.4.5
Date: 2013-09-17
Title: Handling and analysis of high-throughput microbiome census data.
Description: phyloseq provides a set of classes and tools
    to facilitate the import, storage, analysis, and
    graphical display of microbiome census data.
Maintainer: Paul J. McMurdie <mcmurdie@stanford.edu>
Author: Paul J. McMurdie <mcmurdie@stanford.edu>, Susan
    Holmes <susan@stat.stanford.edu>, with contributions
    from Gregory Jordan and Scott Chamberlain
License: AGPL-3
Imports: ape (>= 3.0.7), Biostrings (>= 2.26.3), foreach (>= 1.4),
        ggplot2 (>= 0.9.3), igraph (>= 0.6.5.2), multtest (>= 2.14),
        plyr (>= 1.8), reshape (>= 0.8.4), RJSONIO (>= 1.0.1), scales
        (>= 0.2.3), vegan (>= 2.0.6)
Depends: R (>= 2.15.2), methods, ade4 (>= 1.4.17), picante (>= 1.5.2)
Suggests: genefilter (>= 1.40), testthat (>= 0.7)
Enhances: doParallel (>= 1.0.1)
biocViews: Clustering, Classification, MultipleComparisons,
        QualityControl, GeneticVariability, HighThroughputSequencing
URL: http://dx.plos.org/10.1371/journal.pone.0061217
BugReports: https://github.com/joey711/phyloseq/issues
Collate: 'allClasses.R' 'allPackage.R' 'allData.R' 'as-methods.R'
        'show-methods.R' 'plot-methods.R' 'extract-methods.R'
        'almostAllAccessors.R' 'otuTable-class.R' 'phyloseq-class.R'
        'taxonomyTable-class.R' 'IO-methods.R' 'merge-methods.R'
        'multtest-wrapper.R' 'ordination-methods.R'
        'transform_filter-methods.R' 'validity-methods.R'
        'assignment-methods.R' 'sampleData-class.R' 'extend_vegan.R'
        'network-methods.R' 'distance-methods.R'
        'deprecated_functions.R'
Packaged: 2013-09-18 07:24:02 UTC; biocbuild
Built: R 3.0.1; ; 2013-09-18 12:30:05 UTC; windows
