A package for discriminative motif discovery, designed for high throughput sequencing dataset

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Documentation for package ‘motifRG’ version 1.4.0

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class:Motif Motif objects
control.seq control sequence for CTCF peaks
ctcf.motifs CTCF motifs predicted by motifRG
ctcf.seq sequence for CTCF peaks
findMotif De-novo discovery of distriminative motifs
Motif-class Motif objects
motifHtmlTable create of table of motifs
motifLatexTable create of table of motifs
plotMotif plot motif sequence matches
refinePWMMotif create a PWM (Position Weight Model) model given a initial set of motif matches and input sequences
refinePWMMotifExtend create an extended PWM (Position Weight Model) model given a initial set of motif matches and input sequences
summaryMotif summarize a list of motifs