Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.

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Documentation for package ‘flowFlowJo’ version 1.18.0

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flowFlowJo-package Turn FlowJo workspaces into flowCore compliant objects
collectSummaryFlowInfo Collect Population Statistics on Flow Files
collectSummaryFlowInfo-method Collect Population Statistics on Flow Files
createFlowReport Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
createFlowReport-method Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
fcsSummary-class Collect Population Statistics on Flow Files
fcsSummaryList-class Collect Population Statistics on Flow Files
flowFlowJo Turn FlowJo workspaces into flowCore compliant objects
flowJoCompensate Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate-method Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate-methods Compensate flow cytometry data the same way as FlowJo does
flowJoList-class Parse one or more FlowJo workspaces
flowJoObj-class Parse one or more FlowJo workspaces
gateNodeToFilterObject Parse one or more FlowJo workspaces
gateNodeToFilterObject-method Parse one or more FlowJo workspaces
gatherFlowJoGates Parse one or more FlowJo workspaces
gatherFlowJoGates-method Parse one or more FlowJo workspaces
gatherFlowJoTransformations Parse one or more FlowJo workspaces
gatherFlowJoTransformations-method Parse one or more FlowJo workspaces
getFlowJoCompMatrix Parse one or more FlowJo workspaces
getFlowJoCompMatrix-method Parse one or more FlowJo workspaces
getFlowJoGates getFlowJoGates
getFlowJoGates-method getFlowJoGates
getFlowJoSummary Summarize FlowJo Workspaces
getFlowJoVersion Parse one or more FlowJo workspaces
getFlowJoVersion-method Parse one or more FlowJo workspaces
getWellId Parse one or more FlowJo workspaces
getWellId-method Parse one or more FlowJo workspaces
readFlowJoFile Parse one or more FlowJo workspaces
readFlowJoFile-method Parse one or more FlowJo workspaces
readFlowJoList Parse one or more FlowJo workspaces
simplifyGateNames Standardize flow cytometry gate names
simplifyGateNames-method Standardize flow cytometry gate names