R Interface to Ensembl Variant Effect Predictor

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Documentation for package ‘ensemblVEP’ version 1.0.5

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advanced VEPParam objects
advanced<- VEPParam objects
advancedOpts VEPParam objects
basic VEPParam objects
basic<- VEPParam objects
basicOpts VEPParam objects
cache VEPParam objects
cache<- VEPParam objects
cacheOpts VEPParam objects
class:VEPParam VEPParam objects
colocatedVariants VEPParam objects
colocatedVariants<- VEPParam objects
colocatedVariantsOpts VEPParam objects
database VEPParam objects
database<- VEPParam objects
databaseOpts VEPParam objects
dataformat VEPParam objects
dataformat<- VEPParam objects
dataformatOpts VEPParam objects
ensemblVEP Query Ensembl Variant Effect Predictor
ensemblVEP-method Query Ensembl Variant Effect Predictor
filterqc VEPParam objects
filterqc<- VEPParam objects
filterqcOpts VEPParam objects
identifier VEPParam objects
identifier<- VEPParam objects
identifierOpts VEPParam objects
input VEPParam objects
input<- VEPParam objects
inputOpts VEPParam objects
output VEPParam objects
output<- VEPParam objects
outputOpts VEPParam objects
parseCSQToGRanges Parse the CSQ column of a VCF object into a GRanges object
parseCSQToGRanges-method Parse the CSQ column of a VCF object into a GRanges object
show-method VEPParam objects
VEPParam VEPParam objects
VEPParam-class VEPParam objects