chimera-package	chimera-package
addGA	class.fSet
addGA,fSet-method	class.fSet
addRNA	class.fSet
addRNA,fSet-method	class.fSet
chimera	chimera-package
chimeraSeqs	chimeraSeqs
filterList	filterList
fSet	class.fSet
fSet-class	class.fSet
fusionData	class.fSet
fusionData,fSet-method	class.fSet
fusionGA	class.fSet
fusionGA,fSet-method	class.fSet
fusionGRL	class.fSet
fusionGRL,fSet-method	class.fSet
fusionName	fusionName
fusionPeptides	fusionPeptides
fusionRNA	class.fSet
fusionRNA,fSet-method	class.fSet
importFusionData	importFusionData
plotCoverage	plotCoverage
subreadRun	subreadRun
supportingReads	supportingReads
tophatInstallation	tophatInstallation
tophatRun	tophatRun
