BIOGRID.PSIMI25         Supported PSI-MI 2.5 XML data sources
availableXrefs          Get cross reference(s) of interactors from
                        PSI-MI 2.5 files
availableXrefs-methods
                        Methods for function availableXrefs
bait                    Extract bait, prey, participant, inhibitor,
                        pubmed, confidence value, interaction type, or
                        neutral component information from an object of
                        psimi25Interaction-class
buildPCHypergraph       Build protein complex hypergraph from PSI-MI
                        2.5 files
complexName             Accessor functions for complex
complexes               Extract complexes from psimi25ComplexEntry
eListHandler            xmlEventParse handlers for PSI-MI XML documents
getAbstractByPMID       A function to obtain the abstract information
                        via a Pubmed ID
graphConverter          maps one type of grap onto another
interactionType         Type of the interaction
interactions            List interactions in the given
                        psimi25InteractionEntry object
interactorInfo          Interactor info in a matrix
interactorInfo-methods
                        Methods for Function interactorInfo in Package
                        'RpsiXML'
interactors             Get information of interactors of the given
                        object
list2Matrix             Converts list into matrix
null2na                 Turns null or NA into character "NA"
numInteractions-methods
                        Get interaction number of the given object
parsePsimi25Interaction
                        Parsing PSI-MI 2.5 XML documents into
                        interactions
psimi25Attribute-class
                        Class "psimi25Attribute"
psimi25Complex-class    Class "psimi25Complex"
psimi25ComplexEntry-class
                        Class "psimi25ComplexEntry"
psimi25Experiment-class
                        Class "psimi25Experiment"
psimi25Graph-class      Class "psimi25Graph" ~~~
psimi25Hypergraph-class
                        Class "psimi25Hypergraph"
psimi25Hypergraph2GraphNEL
                        Convert psimi25Hypergraph to graphNEL
psimi25Interaction-class
                        Class "psimi25Interaction"
psimi25InteractionEntry-class
                        Class "psimi25InteractionEntry"
psimi25Interactor-class
                        A class representing interactor from PSI-MI 2.5
                        XML files
psimi25Source-class     Class "psimi25Source"
psimi25XML2Graph        Convert a vector of PSI-MI 2.5 XML files into
                        graph objects
separateXMLDataByExpt   Convert a vector of PSI-MI 2.5 XML files into
                        graph objects based on pubmedID
sourceId-methods        Extract or set source database name or ID in
                        the source database
taxId-methods           Get or Set the NCBI Taxonomy ID or Organism
                        Name
translateID             Finds identifiers of a given object
translateID-methods     Translate interactors into other identifiers
uniprot                 The UniProt Identifier in the PSI-MI 2.5 XML
                        file
uniprot-methods         Methods for Function uniprot in Package
                        'RpsiXML'
validatePSIMI25         Validating PSI-MI 2.5 file with MIF25 XML
                        schema
