CytoscapeConnection     CytoscapeConnection
CytoscapeConnectionClass-class
                        Class "CytoscapeConnectionClass"
CytoscapeWindow         CytoscapeWindow
CytoscapeWindowClass-class
                        Class "CytoscapeWindowClass"
addCyEdge               addCyEdge
addCyNode               addCyNode
addGraphToGraph         addGraphToGraph
clearMsg                clearMsg
clearSelection          clearSelection
copyVisualStyle         copyVisualStyle
createWindow            createWindow
createWindowFromSelection
                        createWindowFromSelection
cy2.edge.names          cy2.edge.names
deleteAllWindows        deleteAllWindows
deleteEdgeAttribute     deleteEdgeAttribute
deleteNodeAttribute     deleteNodeAttribute
deleteSelectedEdges     deleteSelectedEdges
deleteSelectedNodes     deleteSelectedNodes
deleteWindow            deleteWindow
demoSimpleGraph         demoSimpleGraph
displayGraph            displayGraph
dockPanel               dockPanel
eda                     eda
eda.names               eda.names
existing.CytoscapeWindow
                        existing.CytoscapeWindow
fitContent              fitContent
fitSelectedContent      fitSelectedContent
floatPanel              floatPanel
getAdjacentEdgeNames    getAdjacentEdgeNames
getAllEdgeAttributes    getAllEdgeAttributes
getAllEdges             getAllEdges
getAllNodeAttributes    getAllNodeAttributes
getAllNodes             getAllNodes
getArrowShapes          getArrowShapes
getAttributeClassNames
                        getAttributeClassNames
getCenter               getCenter
getDefaultBackgroundColor
                        getDefaultBackgroundColor
getDefaultEdgeReverseSelectionColor
                        getDefaultEdgeReverseSelectionColor
getDefaultEdgeSelectionColor
                        getDefaultEdgeSelectionColor
getDefaultNodeReverseSelectionColor
                        getDefaultNodeReverseSelectionColor
getDefaultNodeSelectionColor
                        getDefaultNodeSelectionColor
getDirectlyModifiableVisualProperties
                        getDirectlyModifiableVisualProperties
getEdgeAttribute        getEdgeAttribute
getEdgeAttributeNames   getEdgeAttributeNames
getEdgeCount            getEdgeCount
getFirstNeighbors       getFirstNeighbors
getGraph                getGraph
getGraphFromCyWindow    getGraphFromCyWindow
getLayoutNameMapping    getLayoutNameMapping
getLayoutNames          getLayoutNames
getLayoutPropertyNames
                        getLayoutPropertyNames
getLayoutPropertyType   getLayoutPropertyType
getLayoutPropertyValue
                        getLayoutPropertyValue
getLineStyles           getLineStyles
getNodeAttribute        getNodeAttribute
getNodeAttributeNames   getNodeAttributeNames
getNodeCount            getNodeCount
getNodePosition         getNodePosition
getNodeShapes           getNodeShapes
getNodeSize             getNodeSize
getSelectedEdgeCount    getSelectedEdgeCount
getSelectedEdges        getSelectedEdges
getSelectedNodeCount    getSelectedNodeCount
getSelectedNodes        getSelectedNodes
getViewCoordinates      getViewCoordinates
getVisualStyleNames     getVisualStyleNames
getWindowCount          getWindowCount
getWindowID             getWindowID
getWindowList           getWindowList
getZoom                 getZoom
hideAllPanels           hideAllPanels
hideNodes               hideNodes
hidePanel               hidePanel
hideSelectedEdges       hideSelectedEdges
hideSelectedNodes       hideSelectedNodes
initEdgeAttribute       initEdgeAttribute
initNodeAttribute       initNodeAttribute
invertEdgeSelection     invertEdgeSelection
invertNodeSelection     invertNodeSelection
layoutNetwork           layoutNetwork
lockNodeDimensions      lockNodeDimensions
makeRandomGraph         makeRandomGraph
makeSimpleGraph         makeSimpleGraph
msg                     msg
new.CytoscapeWindow     new.CytoscapeWindow
noa                     noa
noa.names               noa.names
ping                    ping
pluginVersion           pluginVersion
predictTimeToDisplayGraph
                        predictTimeToDisplayGraph
raiseWindow             raiseWindow
redraw                  redraw
restoreLayout           restoreLayout
saveImage               saveImage
saveLayout              saveLayout
saveNetwork             saveNetwork
selectEdges             selectEdges
selectFirstNeighborsOfSelectedNodes
                        selectFirstNeighborsOfSelectedNodes
selectNodes             selectNodes
sendEdges               sendEdges
sendNodes               sendNodes
setCenter               setCenter
setDefaultBackgroundColor
                        setDefaultBackgroundColor
setDefaultEdgeColor     setDefaultEdgeColor
setDefaultEdgeFontSize
                        setDefaultEdgeFontSize
setDefaultEdgeLineWidth
                        setDefaultEdgeLineWidth
setDefaultEdgeReverseSelectionColor
                        setDefaultEdgeReverseSelectionColor
setDefaultEdgeSelectionColor
                        setDefaultEdgeSelectionColor
setDefaultNodeBorderColor
                        setDefaultNodeBorderColor
setDefaultNodeBorderWidth
                        setDefaultNodeBorderWidth
setDefaultNodeColor     setDefaultNodeColor
setDefaultNodeFontSize
                        setDefaultNodeFontSize
setDefaultNodeLabelColor
                        setDefaultNodeLabelColor
setDefaultNodeReverseSelectionColor
                        setDefaultNodeReverseSelectionColor
setDefaultNodeSelectionColor
                        setDefaultNodeSelectionColor
setDefaultNodeShape     setDefaultNodeShape
setDefaultNodeSize      setDefaultNodeSize
setEdgeAttributes       setEdgeAttributes
setEdgeAttributesDirect
                        setEdgeAttributesDirect
setEdgeColorDirect      setEdgeColorDirect
setEdgeColorRule        setEdgeColorRule
setEdgeFontSizeDirect   setEdgeFontSizeDirect
setEdgeLabelColorDirect
                        setEdgeLabelColorDirect
setEdgeLabelDirect      setEdgeLabelDirect
setEdgeLabelOpacityDirect
                        setEdgeLabelOpacityDirect
setEdgeLabelRule        setEdgeLabelRule
setEdgeLabelWidthDirect
                        setEdgeLabelWidthDirect
setEdgeLineStyleDirect
                        setEdgeLineStyleDirect
setEdgeLineStyleRule    specify the line styles to be used in drawing
                        edges
setEdgeLineWidthDirect
                        setEdgeLineWidthDirect
setEdgeLineWidthRule    setEdgeLineWidthRule
setEdgeOpacityDirect    setEdgeOpacityDirect
setEdgeOpacityRule      setEdgeOpacityRule
setEdgeSourceArrowColorDirect
                        setEdgeSourceArrowColorDirect
setEdgeSourceArrowColorRule
                        Specify Rule for the Source Arrow Color
setEdgeSourceArrowOpacityDirect
                        setEdgeSourceArrowOpacityDirect
setEdgeSourceArrowRule
                        specify the arrow types to be used at the end
                        of an edge, at the 'source' node
setEdgeSourceArrowShapeDirect
                        setEdgeSourceArrowShapeDirect
setEdgeTargetArrowColorDirect
                        setEdgeTargetArrowColorDirect
setEdgeTargetArrowColorRule
                        Specify Rule for the Target Arrow Color
setEdgeTargetArrowOpacityDirect
                        setEdgeTargetArrowOpacityDirect
setEdgeTargetArrowRule
                        specify the arrow types to be used at the end
                        of an edge, at the 'target' node
setEdgeTargetArrowShapeDirect
                        setEdgeTargetArrowShapeDirect
setEdgeTooltipDirect    setEdgeTooltipDirect
setEdgeTooltipRule      setEdgeTooltipRule
setGraph                setGraph
setLayoutProperties     setLayoutProperties
setNodeAttributes       setNodeAttributes
setNodeAttributesDirect
                        setNodeAttributesDirect
setNodeBorderColorDirect
                        setNodeBorderColorDirect
setNodeBorderColorRule
                        setNodeBorderColorRule
setNodeBorderOpacityDirect
                        setNodeBorderOpacityDirect
setNodeBorderWidthDirect
                        setNodeBorderWidthDirect
setNodeBorderWidthRule
                        setNodeBorderWidthRule
setNodeColorDirect      setNodeColorDirect
setNodeColorRule        setNodeColorRule
setNodeFillOpacityDirect
                        setNodeFillOpacityDirect
setNodeFontSizeDirect   setNodeFontSizeDirect
setNodeHeightDirect     setNodeHeightDirect
setNodeImageDirect      setNodeImageDirect
setNodeLabelColorDirect
                        setNodeLabelColorDirect
setNodeLabelDirect      setNodeLabelDirect
setNodeLabelOpacityDirect
                        setNodeLabelOpacityDirect
setNodeLabelRule        setNodeLabelRule
setNodeOpacityDirect    setNodeOpacityDirect
setNodeOpacityRule      setNodeOpacityRule
setNodePosition         setNodePosition
setNodeShapeDirect      setNodeShapeDirect
setNodeShapeRule        setNodeShapeRule
setNodeSizeDirect       setNodeSizeDirect
setNodeSizeRule         setNodeSizeRule
setNodeTooltipRule      setNodeTooltipRule
setNodeWidthDirect      setNodeWidthDirect
setTooltipDismissDelay
                        setTooltipDismissDelay
setTooltipInitialDelay
                        setTooltipInitialDelay
setVisualStyle          setVisualStyle
setWindowSize           setWindowSize
setZoom                 setZoom
showGraphicsDetails     showGraphicsDetails
unhideAll               unhideAll
