Statistical Testing for ChIP-Seq data sets

Documentation for package ‘MMDiff’ version 1.0.0

MMDiff-package	Statistical Testing for ChIP-Seq data sets
Cfp1Dists	Example DBA object used to illustrate usage of the MMDiff package
Cfp1Profiles	Example DBA object used to illustrate usage of the MMDiff package
compHistDists	Compute distances between pairs of histograms
detPeakPvals	Compute p-values for each peak based on distances between histograms
findOutliers	Find peaks with extreme count values
getNormFactors	Determine Normalisation factors
getPeakProfiles	Add histograms (binned read enrichment profiles) to an existing DBA object
MMDiff	Statistical Testing for ChIP-Seq data sets
plotHistDists	plot MMD distances
plotPeak	plot read enrichment profiles at a specific peak for all specified samples.