Package: Rcade
Title: R-based analysis of ChIP-seq And Differential Expression - a
        tool for integrating a count-based ChIP-seq analysis with
        differential expression summary data.
Version: 1.0.0
Date: 2012-01-25
Author: Jonathan Cairns
Maintainer: Jonathan Cairns <jonathan.cairns@cancer.org.uk>
Description: Rcade (which stands for "R-based analysis of ChIP-seq And 
	     Differential Expression") is a tool for integrating
	     ChIP-seq data with differential expression summary data,
	     through a Bayesian framework. A key application is in
	     identifing the genes targeted by a transcription factor
	     of interest - that is, we collect genes that are
	     associated with a ChIP-seq peak, and differential
	     expression under some perturbation related to that TF.
Depends: R (>= 2.14.0), methods, GenomicRanges, baySeq, Rsamtools
Imports: graphics, IRanges, rgl
Suggests: limma, biomaRt, RUnit, BiocGenerics
License: GPL-2
biocViews: DifferentialExpression, GeneExpression, Transcription,
        ChIPseq, Sequencing, Genetics
Packaged: 2012-10-02 05:50:39 UTC; biocbuild
InstallableEverywhere: yes
