Package: oligoClasses
Version: 1.20.0
Title: Classes for high-throughput arrays supported by oligo and crlmm
Author: Benilton Carvalho and Robert Scharpf
Maintainer: Benilton Carvalho <Benilton.Carvalho@cancer.org.uk> and
        Robert Scharpf <rscharpf@jhsph.edu>
Depends: R (>= 2.14), BiocGenerics (>= 0.3.2)
Imports: BiocGenerics, Biobase (>= 2.17.8), methods, graphics, IRanges
        (>= 1.13.30), GenomicRanges, Biostrings (>= 2.23.6), affyio (>=
        1.23.2), ff, foreach, BiocInstaller, utils
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis
Suggests: RSQLite, hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
        pd.genomewidesnp.5, pd.mapping50k.hind240,
        pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
        genomewidesnp6Crlmm, genomewidesnp5Crlmm, crlmm, SNPchip,
        VanillaICE, RUnit, human370v1cCrlmm
Description: This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
License: GPL (>= 2)
LazyLoad: yes
Collate: AllClasses.R AllGenerics.R utils-general.R utils-lds.R
        utils-parallel.R methods-gSet.R initialize-methods.R
        methods-AlleleSet.R methods-AnnotatedDataFrame.R
        methods-FeatureSet.R methods-AssayData.R
        methods-SnpFeatureSet.R methods-oligoSnpSet.R
        methods-CopyNumberSet.R methods-CNSet.R methods-PDInfo.R
        methods-RangedDataCNV.R methods-SnpSet.R
        methods-GenomeAnnotatedDataFrame.R methods-BeadStudioSet.R
        methods-gSetList.R methods-GRanges.R show-methods.R functions.R
        zzz.R
biocViews: Infrastructure
Packaged: 2012-10-02 06:43:29 UTC; biocbuild
Built: R 2.15.1; ; 2012-10-02 13:09:35 UTC; windows
