DNAmotifAlignment       align DNA motifs
colorset                retrieve color setting for logo
pcm2pfm                 convert pcm to pfm
pfm                     "pfm" methods
pfm-class               Class '"pfm"'
plotMotifLogo           plot sequence logo
plotMotifLogoStack      plot sequence logos stack
plotMotifLogoStackWithTree
                        plot sequence logos stack with hierarchical
                        cluster tree
plotXaxis               plot x-axis
plotYaxis               plot y-axis
readPCM                 read pcm from a path
