#Generated by codetoolsBioC version 0.0.16
#Timestamp: Thu Feb 23 13:56:56 2012

#Imports: Biobase, BiocGenerics, KernSmooth, MASS, compositions, fda,
#         flowCore, flowViz, flowWorkspace, grDevices, graphics,
#         lattice, methods, mvoutlier, stats, utils

importClassesFrom(flowCore, flowFrame, parameterFilter, parameters)

importClassesFrom(methods, character, list, numeric)

importMethodsFrom(Biobase, channel)

importMethodsFrom(BiocGenerics, cbind, colnames, lapply, mapply, order,
                  paste, pmax, pmin, rbind, rownames, sapply, setdiff,
                  table, unique)

importMethodsFrom(flowCore, "%in%", "%subset%", Subset, assign,
                  "colnames<-", description, "description<-", exprs,
                  "exprs<-", filter, filterDetails, fsApply, head,
                  "identifier<-", keyword, ncol, nrow, pData,
                  "pData<-", parameters, "parameters<-", phenoData,
                  "phenoData<-", print, sampleNames, sort, split,
                  summary, tail,colnames)

importMethodsFrom(flowViz, densityplot, glpolygon, xyplot)

importMethodsFrom(flowWorkspace, getData)

importFrom(Biobase, listLen)

importFrom(KernSmooth, bkde2D)

importFrom(MASS, huber, hubers, rlm)

importFrom(compositions, dist)

importFrom(fda, Data2fd, create.bspline.basis, eval.fd, fdPar,
           landmarkreg)

importFrom(flowCore, boundaryFilter, char2ExpressionFilter,
           curv1Filter, curv2Filter, filterList, flowFrame,
           norm2Filter, quadGate, rectangleGate, sampleFilter)

importFrom(grDevices, chull, col2rgb, contourLines, dev.cur, dev.off,
           png, rainbow, rgb, x11)

importFrom(graphics, abline, legend, lines, par, plot, points, polygon,
           rect, text)

importFrom(lattice, make.groups, panel.abline, panel.number,
           panel.points, panel.polygon, panel.segments,
           panel.stripplot, panel.text, stripplot, trellis.focus,
           trellis.par.get, trellis.unfocus, which.packet)

importFrom(methods, "@<-", as, is, new, selectMethod)

importFrom(mvoutlier, pcout)

importFrom(stats, anova, approxfun, as.formula, as.hclust, chisq.test,
           density, dnorm, fitted, formula, kmeans, mad, median,
           na.omit, optimize, qnorm, quantile, resid, sd, var)

importFrom(utils, capture.output)

export("lymphGate",
       "lymphFilter",
       "oneDGate",
       "quadrantGate",
       "rangeGate",
       "rangeFilter",
       "warpSet",
       "warpSetGS",
	"warpSetNCDF",
	"warpSetNCDFLowMem",
	"proBin",
       "binByRef",
       "gaussNorm",
       "plotBins",
       "calcPearsonChi",
       "calcPBChiSquare",
       "gpaSet",
       "iProcrustes",
       "normQA")

exportClasses("lymphFilter","rangeFilter")



exportMethods("%in%")

