addVar	addVar
adjustPeaks	adjustPeaks
adjustPeaks,RangedDataList-method	adjustPeaks
adjustPeaks-methods	adjustPeaks
bg3	sl2
bg3names	sl2
boostMDS	boostMDS
clusGPS	clusGPS
clusGPS,distGPS,mds-method	clusGPS
clusGPS,distGPS,missing-method	clusGPS
clusGPS-class	clusGPS-class
clusGPS-method	clusGPS-class
clusGPS-methods	clusGPS
contour2dDP	clusGPS
contour3dDP	clusGPS
distGPS	distGPS
distGPS,data.frame-method	distGPS
distGPS,matrix-method	distGPS
distGPS,RangedDataList-method	distGPS
distGPS-class	distGPS-class
distGPS-methods	distGPS
domainDist	domainDist
geneSample	geneSample
geneSetGPS	geneSetGPS
geneSetGPS,data.frame,mds,character-method	geneSetGPS
geneSetGPS,matrix,mds,character-method	geneSetGPS
geneSetGPS-methods	geneSetGPS
getURL	getURL
gff2RDList	gff2RDList
hclust-class	clusGPS-class
mds	mds
mds,distGPS,mds-method	mds-class
mds,distGPS,missing-method	mds
mds,splitDistGPS,missing-method	mds
mds-class	mds-class
mds-methods	mds
plot,clusGPS,ANY-method	clusGPS-class
plot,clusGPS-method	clusGPS-class
plot,mds,ANY-method	mds
plot,mds-method	mds-class
plotContour	clusGPS
procrustesAdj	procrustesAdj
procrustesAdj,mds,distGPS-method	procrustesAdj
procrustesAdj-methods	procrustesAdj
S2Controls	geneSample
show,clusGPS-method	clusGPS-class
show,distGPS-method	distGPS-class
show,mds-method	mds-class
show,splitDistGPS-method	splitDistGPS-class
sl2	sl2
sl2names	sl2
sl2seq	sl2
sl2seqnames	sl2
splidDistGPS-class	splitDistGPS-class
splitDistGPS,data.frame-method	distGPS
splitDistGPS,distGPS-method	splitDistGPS-class
splitDistGPS,matrix-method	distGPS
splitDistGPS-class	distGPS-class
uniqueCount	distGPS
