addVar                  Plot vector of a quantitative variable over a
                        MDS map.
adjustPeaks             Adjust peak width so that samples obtained
                        under different conditions become comparable.
boostMDS                Improve goodness-of-fit of a given MDS solution
                        in terms of R-square.
clusGPS                 Hierarchical clustering (Agglomerative Nesting)
                        of elements based on their input pairwise
                        distances.
clusGPS-class           Class '"clusGPS"'
distGPS                 Compute matrix with pairwise distances between
                        objects. Several GPS metrics are available.
distGPS-class           Class '"distGPS"'
domainDist              Overview of intra and inter-domain distances.
geneSample              Sample binding site data from Drosophila
                        melanogaster S2-DSRC cell lines (ChIP-chip),
                        coming from modEncode Release 21.
geneSetGPS              Highlight point (gene) position over a
                        Multi-dimensional Scaling plot.
getURL                  Retrieve file from URL.
gff2RDList              Retrieve binding site information from GFF3
                        files.
mds                     Metric and non-metric Multidimensional Scaling
                        for a distGPS object.
mds-class               Class '"mds"'
procrustesAdj           Use Procrustes to adjust an MDS map containing
                        samples obtained under different conditions,
                        e.g. technology or genetic backgrounds.
sl2                     Sample binding site and related data from
                        Drosophila melanogaster.
splidDistGPS-class      Class '"splitDistGPS"'
