$,gSetList-method	BeadStudioSetList-methods
$<-,gSetList-method	BeadStudioSetList-methods
BeadStudioSet	BeadStudioSet
BeadStudioSetList	BeadStudioSetList
constructBafLrrSetListFrom	constructOligoSetListFrom
constructOligoSetListFrom	constructOligoSetListFrom
copyNumberLimits	copyNumberLimits
dims,gSetList-method	BeadStudioSetList-methods
dims,oligoSetList-method	oligoSetList-methods
emission	Viterbi-methods
emission,Vit-method	Viterbi-methods
hmm	hmm-methods
hmm,BeadStudioSet-method	hmm-methods
hmm,BeadStudioSetList-method	hmm-methods
hmm,CNSet-method	hmm-methods
hmm,oligoSetList-method	hmm-methods
hmm,oligoSnpSet-method	hmm-methods
hmm,SnpSet2-method	hmm-methods
hmm-methods	hmm-methods
hmm.setup	defunct
hmmBeadStudioSet	hmmBeadStudioSet
hmmBeadStudioSetList	hmmBeadStudioSet
hmmOligoSetList	hmmBeadStudioSet
hmmOligoSnpSet	hmmBeadStudioSet
HmmOptionList	defunct
HmmOptionList-class	defunct
hmmResults	hmmResults
hmmSnpSet	hmmSnpSet
icePlatforms	icePlatforms
length,gSetList-method	BeadStudioSetList-methods
read.bsfiles	read.bsfiles
rescale	rescale
robustSds	robustSds
rowMAD	rowMAD
Viterbi-methods	Viterbi-methods
viterbi2Wrapper	viterbi2Wrapper
[,BeadStudioSetList-method	BeadStudioSetList-methods
[,gSetList-method	BeadStudioSetList-methods
[[,BafLrrSetList,ANY,ANY-method	BeadStudioSetList-methods
[[,BeadStudioSetList,ANY,ANY-method	BeadStudioSetList-methods
[[,oligoSetList,ANY,ANY-method	BeadStudioSetList-methods
[[,oligoSetList-method	oligoSetList-methods
[[<-,BafLrrSetList,ANY,ANY,BafLrrSet	BeadStudioSetList-methods
[[<-,BafLrrSetList,ANY,ANY,BafLrrSet-method	BeadStudioSetList-methods
