BeadStudioSet           Constructor for BeadStudioSet class
BeadStudioSetList       Constructor for BeadStudioSetList class.
Viterbi-methods         Methods for Viterbi objects
[,BeadStudioSetList-method
                        BeadStudioSetList methods
[[,oligoSetList-method
                        Methods for oligoSetList class
constructOligoSetListFrom
                        Construct a chromosome-list container from a
                        CNSet object
copyNumberLimits        Constraints for updating the means for the copy
                        number states in the hidden markov model.
hmm-methods             Hidden Markov Model methods
hmmBeadStudioSet        HMM functions for oligoSnpSet and BeadStudioSet
                        containers
hmmResults              Example output from hmm
hmmSnpSet               Function for fitting a HMM to SnpSet containers
icePlatforms            List platforms for which ICE option is
                        supported.
read.bsfiles            Read BeadStudio/GenomeStudio processed data.
rescale                 Rescale a numeric vector
robustSds               Calculate robust estimates of the standard
                        deviation
rowMAD                  Calculate the median absolute deviation for
                        each row in a matrix.
viterbi2Wrapper         Wrapper function for fitting the viterbi
                        algorithm
