Package: VanillaICE
Version: 1.20.3
Title: A Hidden Markov Model for high throughput genotyping arrays
Author: Robert Scharpf <rscharpf@jhsph.edu>, Kevin Scharpf, and  Ingo Ruczinski <ingo@jhsph.edu>
Maintainer: Robert Scharpf <rscharpf@jhsph.edu>
Depends: R (>= 2.14.0)
Imports: stats, utils, methods, Biobase, oligoClasses (>=
        1.19.36),lattice, IRanges (>= 1.13.22), grid, msm, crlmm,
        foreach, GenomicRanges, matrixStats
Suggests: genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter,
        RSQLite, foreach, RUnit, pd.mapping50k.hind240, SNPchip (>=
        2.2.0)
Enhances: DNAcopy, crlmm
Description: Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays
License: LGPL-2
LazyLoad: yes
Collate: AllGenerics.R AllClasses.R methods-AssayData.R methods-CNSet.R
        methods-CopyNumberSet.R methods-gSetList.R
        methods-BeadStudioSet.R methods-SnpSet.R methods-Vit.R
        methods-Viterbi.R methods-Viterbi2.R
        methods-BeadStudioSetList.R methods-oligoSetList.R
        hmm-methods.R deprecated-functions.R genotype-functions.R
        hmm-functions.R simulation-functions.R viterbi-functions.R
        functions.R utils.R zzz.R
biocViews: Bioinformatics, CopyNumberVariants, SNP, GeneticVariability,
        Visualization
Packaged: 2012-10-10 05:15:10 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-10-10 11:30:14 UTC; windows
Archs: i386, x64
