AmigoDot                AmigoDot constructor and accessors
AmigoDot-class          Class "AmigoDot"
AmigoDot.to.Cyto        Opening the AmigoDot graph in Cytoscape through
                        RCytoscape.
AmigoDot.to.graphAM     Converts an AmigoDot S4 object to a graphAM
                        object.
AmigoDot.to.graphNEL    Converts an AmigoDot S4 object to a graphNEL
                        object.
RamiGO                  AmiGO visualize R interface
adjM2gml                Create GML file from readAmigoDot output.
c5.go.mapping           MSigDB C5 GO term to GO ID mapping
exportCytoGML           Writes out an igraph graph to a Cytoscape
                        readable GML file.
getAmigoTree            Getting the DAG GO tree for a set of GO ID's.
igraph-class            Class '"igraph"'
readAmigoDot            Parser for the GraphViz DOT format.
