Annotated-class         Annotated class
AtomicList-class        Lists of Atomic Vectors in Natural and Rle Form
DataFrame-class         External Data Frame
DataFrameList-class     List of DataFrames
DataTable-API           The DataTable API
DataTable-stats         Statistical modeling with DataTable
FilterRules-class       Collection of Filter Rules
GappedRanges-class      GappedRanges objects
Grouping-class          Grouping objects
Hits-class              Set of hits between 2 vector-like objects
HitsList-class          List of Hits objects
IRanges-class           IRanges and NormalIRanges objects
IRanges-constructor     The IRanges constructor and supporting
                        functions
IRanges-setops          Set operations on IRanges objects
IRanges-utils           IRanges utility functions
IRangesList-class       List of IRanges and NormalIRanges
IntervalTree-class      Interval Search Trees
List-class              List objects
MaskCollection-class    MaskCollection objects
OverlapEncodings-class
                        OverlapEncodings objects
RangedData-class        Data on ranges
RangedDataList-class    Lists of RangedData
RangedSelection-class   Selection of ranges and columns
Ranges-class            Ranges objects
Ranges-comparison       Comparing and ordering ranges
RangesList-class        List of Ranges
RangesList-utils        RangesList utility functions
RangesMapping-class     Mapping of ranges to another sequence
Rle-class               Rle objects
RleViews-class          The RleViews class
RleViewsList-class      List of RleViews
SimpleList-class        Simple and Compressed List Classes
Vector-class            Vector objects
Views-class             Views objects
Views-utils             Utility functions and numeric summary of Views
                        of numerics
ViewsList-class         List of Views
XDoubleViews-class      The XDoubleViews class
XIntegerViews-class     The XIntegerViews class
XRawList-class          XRawList objects
XVector-class           XVector objects
XVectorList-class       XVectorList objects
compact                 Object compaction
coverage                Coverage across a set of ranges
encodeOverlaps          Compute overlap encodings
endoapply               Endomorphisms via application of a function
                        over an object's elements
expand                  The expand method for uncompressing compressed
                        data columns
findOverlaps-methods    findOverlaps (and related) methods for Ranges,
                        Views, RangesList, ViewsList, and RangedData
                        objects
funprog-methods         Functional programming methods for List objects
inter-range-methods     Inter range transformations of a Ranges, Views,
                        RangesList, MaskCollection, or RangedData
                        object
intra-range-methods     Intra range transformations of a Ranges, Views,
                        RangesList, MaskCollection, or XVectorList
                        object
isConstant              Test if an atomic vector or array is constant
multisplit              Split elements belonging to multiple groups
nearest-methods         Finding the nearest range neighbor
rdapply                 Applying over spaces
read.Mask               Read a mask from a file
reverse                 reverse
runstat                 Fixed width running window summaries across
                        vector-like objects
safeExplode             Low-level string utilities
score                   Score accessor and setter
seqapply                Apply function and cast to Vector
updateObject-methods    Update an object of a class defined in IRanges
                        to its current class definition
