Gene Functional Class Analysis

Documentation for package ‘GeneGroupAnalysis’ version 1.4.0

GeneGroupAnalysis-package	The Gene Group Analysis package for Gene Functional Class Analysis.
ArrayInfoFun	Function that extracts the required information from the data set.
GeneGroupAnalysis	The Gene Group Analysis package for Gene Functional Class Analysis.
GeneGrps2AffyGrpsFun	Function that translates GO hierarchical tree of gene symbols to a groups of Affymetrix identifiers of interest.
GeneMaxVarFun	Function to compute the Affymetrix identifiers with the maximum variability between phenotypes.
GGAdata	List containing a collection of gene symbols with their associated GO term and GO hierarchical trees for each ontology
GibbsAllFun.ts	Function to compute the Gibb's sampler for the series data design.
GibbsFun.cs	Function to compute the Gibb's sampler for the cross-sectional data design.
GibbsNPFun.ts	Function to compute the Gibb's sampler for the series data design.
MCMCData.cs	Function that computes the required data set objects for the Gibb's sampler under a cross-sectional data design.
MCMCData.ts	Function that computes the required data set objects for the Gibb's sampler under a time series data design.
SizeGOAffyGrps	Function to compute gene functional classes with a desired size.