Package: CSAR
Type: Package
Title: Statistical tools for the analysis of ChIP-seq data
Version: 1.10.0
Date: 2009-11-09
Author: Jose M Muino
Description: Statistical tools for ChIP-seq data analysis. The package includes the statistical  method described in Kaufmann et al. (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average DNA fragment size subjected to sequencing into account, the software calculates genomic single-nucleotide read-enrichment values. After normalization, sample and control are compared using a test based on the Poisson distribution. Test statistic thresholds to control the false discovery rate are obtained through random permutation.
Depends: R (>= 2.15.0), IRanges, GenomicRanges
Maintainer: Jose M Muino <jose.muino@wur.nl>
Suggests: ShortRead, Biostrings
Imports: stats, utils
License: Artistic-2.0
biocViews: ChIPseq,Transcription,Genetics
LazyLoad: yes
LazyData: yes
Packaged: 2012-10-02 07:01:34 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-10-02 12:49:12 UTC; windows
Archs: i386, x64
