annotate                Automatic deconvolution/annotation of LC/ESI-MS
                        data
annotateDiffreport      Automatic deconvolution/annotation of LC/ESI-MS
                        data
calcCaS                 EIC correlation grouping of LC/ESI-MS data
calcCiS                 Calculate peak distance matrix after EIC
                        correlation
calcIsotopes            Calculate isotope distance matrix from
                        xsAnnotate object
calcPC,xsAnnotate-method
                        Peakclustering into pseudospectra according to
                        a distance matrix
calcPC.hcs              Peakclustering into pseudospectra with the
                        highly connected subgraphs approach
calcPC.lpc              Peakclustering into pseudospectra with the
                        label-propagation-community algorithm
cleanParallel           Cleans up with spawned slave processes after
                        use
combinexsAnnos          Check CAMERA ion species annotation due to
                        matching with opposite ion mode
findAdducts             Calculate Adducts and Annotate LC/ESI-MS
                        Spectra
findIsotopes            Deconvolute/Annotate LC/ESI-MS data
findNeutralLoss         Find pseudospectra that contains a specific
                        neutral loss
findNeutralLossSpecs    Find pseudospectra that contains a specific
                        neutral loss
getAllPeakEICs          Generate EIC information from raw data
getIsotopeCluster       Retrieve the annotatad isotopes
getPeaklist             Generate the annotatad peaklist
getpspectra             Retrieve a peaklist of one or more
                        pseudospectra
groupCorr               EIC correlation grouping of LC/ESI-MS data
groupFWHM               FWHM-Grouping of LC/ESI-MS data
mm14                    Extract of marker mixture 14 LC/MS data
plotEICs.xsAnnotate     Plot extracted ion chromatograms from
                        (multiple) Pseudospectra
plotPsSpectrum.xsAnnotate
                        Plot a Pseudospectrum
psDist-methods          Distance methods for xsAnnotate
ruleSet-class           Class 'ruleSet'
xsAnnotate              xsAnnotate constructor for an provided xcmsSet
                        object
xsAnnotate-class        Class xsAnnotate, a class for annotated peak
                        data
