Package: ADaCGH2
Version: 1.8.0
Date: 2011-10-19
Title: Analysis of data from aCGH experiments using parallel computing
        and ff objects
Author: Ramon Diaz-Uriarte <rdiaz02@gmail.com>, Oscar M. Rueda <rueda.om@gmail.com>. Wavelet-based aCGH smoothing code from Li Hsu <lih@fhcrc.org> and Douglas Grove <dgrove@fhcrc.org>. Imagemap code from Barry Rowlingson <B.Rowlingson@lancaster.ac.uk>. HaarSeg code from Erez Ben-Yaacov; downloaded from <http://www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm>
Maintainer: Ramon Diaz-Uriarte <rdiaz02@gmail.com>
Depends: R (>= 2.11.0), tilingArray, aCGH, waveslim, cluster, snapCGH,
        snowfall, ff
Suggests: GLAD, DNAcopy, CGHregions, rlecuyer
Enhances: Rmpi, multicore
Description: Analysis and plotting of array CGH data. Allows usage of
	     Circular Binary Segementation, wavelet-based smoothing 
	     (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), 
	     HMM, BioHMM, GLAD, CGHseg. Most computations are
	     parallelized. 
biocViews: Microarray, CopyNumberVariants
LazyLoad: Yes
License: GPL (>= 3)
URL: http://launchpad.net/adacgh, http://wavicgh.bioinfo.cnio.es
Packaged: 2012-10-02 07:15:52 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-10-02 12:37:22 UTC; windows
Archs: i386, x64
