Package: pasilla
Title: Data package with per-exon and per-gene read counts of RNA-seq
        samples of Pasilla knock-down by Brooks et al., Genome Research
        2011.
Version: 0.2.13
Author: Wolfgang Huber, Alejandro Reyes
Maintainer: Alejandro Reyes <reyes@embl.de>
Description: This package provides per-exon and per-gene read counts
   computed for selected genes from RNA-seq data that were presented in
   the article "Conservation of an RNA regulatory map between Drosophila
   and mammals" by Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit
   S, Brenner SE, Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub
   2010 Oct 4, PMID: 20921232.  The experiment studied the effect of RNAi
   knockdown of Pasilla, the Drosophila melanogaster ortholog of
   mammalian NOVA1 and NOVA2, on the transcriptome.  The package vignette
   describes how the data provided here were derived from the RNA-Seq
   read sequence data that is provided by NCBI Gene Expression Omnibus
   under accession numbers GSM461176 to GSM461181
biocViews: ExperimentData, RNAseqData
License: LGPL
Depends: DEXSeq, DESeq
Suggests: locfit, edgeR, xtable
Packaged: 2012-07-20 19:30:56 UTC; biocbuild
Built: R 2.15.1; ; 2012-07-20 21:30:06 UTC; windows
