.RCMloss-method         Internal function
CNGEheatmaps            Parellel CN and GE heatmap plotting
ExpressionSet2order     Genomic ordering of ExpressionSet-objects.
ExpressionSet2subset    Subsetting ExpressionSet-objects.
ExpressionSet2weightedSubset
                        Weighted subsetting ExpressionSet-objects.
RCMestimation           Fitting of the random coefficients model.
RCMrandom               Random data from the random coefficients model.
RCMrandom-method        Methods for Function RCMrandom
RCMtest                 Hypothesis testing within the random
                        coefficient model.
cghCall2maximumSubset   Maximum subsetting cghCall-objects.
cghCall2order           Genomic ordering of cghCall-objects.
cghCall2subset          Subsetting cghCall-objects.
cghCall2weightedSubset
                        Weighted subsetting cghCall-objects.
entTest-class           Class "entTest" for storing the results of the
                        function entropyTest.
entropyTest             One-sided two-sample test for entropy
                        comparison
expandMatching2singleIDs
                        Expand matching to single entries
getSegFeatures          Identical signature features selection from
                        cghCall-object.
hdEntropy               Entropy estimation.
hdMI                    Mutual information estimation.
matchAnn2Ann            Genomic location matching of two sets of
                        features
matchCGHcall2ExpressionSet
                        Genomic location matching of CN and GE data
merge2ExpressionSets    Merge two ExpressionSet-objects into one
                        ExpressionSet-object
merge2cghCalls          Merge two cghCall-objects into one
                        cghCall-object
miTest-class            Class "miTest" for storing the results of the
                        function mutInfTest.
mutInfTest              Test for mutual information
nBreakpoints            Number of breakpoints
pollackCN16             Breast cancer data (copy number)
pollackGE16             Breast cancer data (gene expression)
profilesPlot            CN-GE profiles plot
rcmFit-class            Class "rcmFit" for storing the results of the
                        function RCMestimation.
rcmTest-class           Class "rcmTest" for storing the results of the
                        function RCMtest.
sigaR-package           statistics for integrative genomics analyses in
                        R
splitMatchingAtBreakpoints
                        Split matching at breakpoints
summary-method          Methods for Function summary
uniqGenomicInfo         Unique genomic location information
