calculateRPM	calculateRPM
calculateRPM,r3Cseq-method	calculateRPM
contrCoverage	contrCoverage
contrCoverage,r3Cseq-method	contrCoverage
contrInteractionRegions	contrInteractionRegions
contrInteractionRegions,r3Cseq-method	contrInteractionRegions
contrRPM	contrRPM
contrRPM,r3Cseq-method	contrRPM
enzyme.db	enzyme.db
expCoverage	expCoverage
expCoverage,r3Cseq-method	expCoverage
expInteractionRegions	expInteractionRegions
expInteractionRegions,r3Cseq-method	expInteractionRegions
export3Cseq2bedGraph	export3Cseq2bedGraph
export3Cseq2bedGraph,r3Cseq-method	export3Cseq2bedGraph
exportInteractions2text	exportInteractions2text
exportInteractions2text,r3Cseq-method	exportInteractions2text
expRPM	expRPM
expRPM,r3Cseq-method	expRPM
generate3CseqReport	generate3CseqReport
generate3CseqReport,r3Cseq-method	generate3CseqReport
getCoverage	getCoverage
getCoverage,r3Cseq-method	getCoverage
getInteractions	getInteractions
getInteractions,r3Cseq-method	getInteractions
getReadCountPerRestrictionFragment	getReadCountPerRestrictionFragment
getReadCountPerRestrictionFragment,r3Cseq-method	getReadCountPerRestrictionFragment
getViewpoint	getViewpoint
getViewpoint,r3Cseq-method	getViewpoint
my.data	my.data
plot3Cecdf	plot3Cecdf
plot3Cecdf,r3Cseq-method	plot3Cecdf
plotInteractionsNearViewpoint	plotInteractionsNearViewpoint
plotInteractionsNearViewpoint,r3Cseq-method	plotInteractionsNearViewpoint
plotInteractionsPerChromosome	plotInteractionsPerChromosome
plotInteractionsPerChromosome,r3Cseq-method	plotInteractionsPerChromosome
plotOverviewInteractions	plotOverviewInteractions
plotOverviewInteractions,r3Cseq-method	plotOverviewInteractions
r3Cseq	r3Cseq-class
r3Cseq-class	r3Cseq-class
