Collection of Merging Techniques for Gene Expression Data

Documentation for package ‘inSilicoMerging’ version 1.0.8

inSilicoMerging-package	Collection of Merging Techniques for Gene Expression Data.
inSilicoMerging	Collection of Merging Techniques for Gene Expression Data.
measureAsymmetry	Calculate asymmetry index for (merged) ExpressionSet
measureGenesMeanCorrCoef	Calculate gene mean correlation coefficient between two independent studies before and after applying batch effect removal methods.
measureGenesOverlap	Calculate Genes Overlap index for (merged) ExpressionSet
measureSamplesMeanCorrCoef	Calculate sample mean correlation coefficient between two independent studies before and after applying batch effect removal methods.
measureSamplesOverlap	Calculate Samples Overlap index for (merged) ExpressionSet
measureSignificantGenesOverlap	Compares the overlap in significant genes between two independent studies before and after applying batch effect removal methods.
merge	General method to merge different ExpressionSets
plotDendrogram	Create dendrogram from (merged) ExpressionSet
plotGeneWiseBoxPlot	Create gene-wise boxplot from (merged) ExpressionSet
plotGeneWiseDensity	Create gene-wise density plots from (merged) ExpressionSet
plotMDS	Create double-labeled MDS plot from (merged) ExpressionSet
plotRLE	Create RLE plot from (merged) ExpressionSet