align.plots             align plots on x axis
autoplot                Generic autoplot function
fortify                 Fortify a object to a data frame
geom_alignment          Alignment geoms for GRanges object
geom_arch               Arch geoms for GRanges object
geom_arrow              Arrow geoms for GRanges object
geom_arrowrect          Arrowrect geoms for GRanges object
geom_bar                Segment geoms for GRanges object
geom_chevron            Chevron geoms for GRanges object
geom_rect               Rect geoms for GRanges object
geom_segment            Segment geoms for GRanges object
layout_circle           Create a circle layout
layout_karyogram        Create a karyogram layout
plotFragLength          Plot estimated fragment length for paired-end
                        RNA-seq data
plotGrandLinear         Manhattan for GWAS
plotRangesLinkedToData
                        Plot Ranges Linked with Data
plotSingleChrom         Plot single chromosome with cytoband
plotSpliceSum           Plot Splice Summary from RNA-seq data
plotStackedOverview     Plot stacked overview
rescale                 rescale ggplot object
stat_aggregate          Generates summaries on the specified windows
stat_coverage           Calculate coverage
stat_gene               Calculate gene structure
stat_identity           Calculate coverage
stat_mismatch           Calculate mismatch summary
stat_stepping           Calculate stepping levels
stat_table              Tabulate a GRanges object
theme_alignment         Theme for alignment
theme_null              Blank theme
tracks                  Tracks for genomic graphics
