Static visualization for genomic data.

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Documentation for package ‘ggbio’ version 1.4.6

Help Pages

align.plots align plots on x axis
Arith Tracks for genomic graphics
Arith-method Tracks for genomic graphics
autoplot Generic autoplot function
autoplot-method Generic autoplot function
backup Tracks for genomic graphics
backup-method Tracks for genomic graphics
fortify Fortify a object to a data frame
fortify-method Fortify a object to a data frame
geom_alignment Alignment geoms for GRanges object
geom_alignment-method Alignment geoms for GRanges object
geom_arch Arch geoms for GRanges object
geom_arch-method Arch geoms for GRanges object
geom_arrow Arrow geoms for GRanges object
geom_arrow-method Arrow geoms for GRanges object
geom_arrowrect Arrowrect geoms for GRanges object
geom_arrowrect-method Arrowrect geoms for GRanges object
geom_bar Segment geoms for GRanges object
geom_bar-method Segment geoms for GRanges object
geom_chevron Chevron geoms for GRanges object
geom_chevron-method Chevron geoms for GRanges object
geom_rect Rect geoms for GRanges object
geom_rect-method Rect geoms for GRanges object
geom_segment Segment geoms for GRanges object
geom_segment-method Segment geoms for GRanges object
layout_circle Create a circle layout
layout_circle-method Create a circle layout
layout_karyogram Create a karyogram layout
layout_karyogram-method Create a karyogram layout
plotFragLength Plot estimated fragment length for paired-end RNA-seq data
plotFragLength-method Plot estimated fragment length for paired-end RNA-seq data
plotGrandLinear Manhattan for GWAS
plotRangesLinkedToData Plot Ranges Linked with Data
plotSingleChrom Plot single chromosome with cytoband
plotSpliceSum Plot Splice Summary from RNA-seq data
plotSpliceSum-method Plot Splice Summary from RNA-seq data
plotStackedOverview Plot stacked overview
print Tracks for genomic graphics
print-method Tracks for genomic graphics
rescale rescale ggplot object
rescale-method rescale ggplot object
reset Tracks for genomic graphics
reset-method Tracks for genomic graphics
show Tracks for genomic graphics
show-method Tracks for genomic graphics
stat_aggregate Generates summaries on the specified windows
stat_aggregate-method Generates summaries on the specified windows
stat_coverage Calculate coverage
stat_coverage-method Calculate coverage
stat_gene Calculate gene structure
stat_gene-method Calculate gene structure
stat_identity Calculate coverage
stat_identity-method Calculate coverage
stat_mismatch Calculate mismatch summary
stat_mismatch-method Calculate mismatch summary
stat_stepping Calculate stepping levels
stat_stepping-method Calculate stepping levels
stat_table Tabulate a GRanges object
stat_table-method Tabulate a GRanges object
summary Tracks for genomic graphics
summary-method Tracks for genomic graphics
theme_alignment Theme for alignment
theme_null Blank theme
tracks Tracks for genomic graphics
Tracks-class Tracks for genomic graphics
update Tracks for genomic graphics
update-method Tracks for genomic graphics
xlim Tracks for genomic graphics
xlim-method Tracks for genomic graphics
xlim<- Tracks for genomic graphics
xlim<--method Tracks for genomic graphics