Package: VariantAnnotation
Type: Package
Title: Annotation of Genetic Variants
Description: Annotate variants with respect to location and amino acid coding 
Version: 1.2.11
Author: Valerie Obenchain, Martin Morgan, Michael Lawrence 
Maintainer: Valerie Obenchain <vobencha@fhcrc.org>
License: Artistic-2.0
biocViews: DataImport, Sequencing, HighThroughputSequencing, SNP,
        Annotation, Genetics, Homo_sapiens
Depends: R (>= 2.8.0), methods, GenomicRanges (>= 1.8.13), Rsamtools
        (>= 1.7.41)
Imports: methods, BiocGenerics (>= 0.1.0), IRanges (>= 1.13.5), Biobase
        (>= 2.15.1), Rsamtools (>= 1.7.41), AnnotationDbi (>= 1.17.11),
        Biostrings (>= 2.23.4), zlibbioc, BSgenome, GenomicFeatures,
        snpStats, DBI
Suggests: RUnit, BSgenome.Hsapiens.UCSC.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        SNPlocs.Hsapiens.dbSNP.20110815, SIFT.Hsapiens.dbSNP132,
        PolyPhen.Hsapiens.dbSNP131
LinkingTo: IRanges, Biostrings, Rsamtools
LazyLoad: yes
Packaged: 2012-08-29 06:26:47 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-08-29 11:00:22 UTC; windows
Archs: i386, x64
