BeadStudioSet           Constructor for BeadStudioSet class
BeadStudioSetList       Constructor for BeadStudioSetList class.
BeadStudioSetList-class
                        BeadStudioSetList class
Viterbi-methods         Methods for Viterbi objects
centerAutosomesAt       Center estimates of copy number for autosomes.
copyNumberLimits        Constraints for updating the means for the copy
                        number states in the hidden markov model.
hmm-methods             Hidden Markov Model methods
hmmBeadStudioSet        HMM functions for oligoSnpSet and BeadStudioSet
                        containers
hmmResults              Example output from hmm
hmmSnpSet               Function for fitting a HMM to SnpSet containers
icePlatforms            List platforms for which ICE option is
                        supported.
read.bsfiles            Read BeadStudio/GenomeStudio processed data.
rescale                 Rescale a numeric vector
robustSds               Calculate robust estimates of the standard
                        deviation
rowMAD                  Calculate the median absolute deviation for
                        each row in a matrix.
sd-methods              Methods for estimating copy number standard
                        deviations.
viterbi2Wrapper         Wrapper function for fitting the viterbi
                        algorithm
