Package: VanillaICE
Version: 1.18.0
Title: A Hidden Markov Model for high throughput genotyping arrays
Author: Robert Scharpf <rscharpf@jhsph.edu>, Kevin Scharpf, and  Ingo Ruczinski <ingo@jhsph.edu>
Maintainer: Robert Scharpf <rscharpf@jhsph.edu>
Depends: R (>= 2.14.0)
Imports: stats, utils, methods, Biobase, oligoClasses (>= 1.17.36),
        lattice, IRanges (>= 1.13.22), grid, msm, crlmm (>= 1.13.12),
        foreach
Suggests: genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter,
        RSQLite, foreach, RUnit, pd.mapping50k.hind240, SNPchip (>=
        2.0.3)
Enhances: DNAcopy, crlmm
Description: Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays
License: LGPL-2
LazyLoad: yes
Collate: AllGenerics.R AllClasses.R methods-CopyNumberSet.R
        methods-oligoSnpSet.R methods-BeadStudioSet.R
        methods-RangedDataHMM.R methods-HmmOptionList.R methods-CNSet.R
        methods-matrix.R methods-SnpSet.R methods-Vit.R
        methods-Viterbi.R methods-Viterbi2.R
        methods-GenomeAnnotatedDataFrame.R methods-BeadStudioSetList.R
        hmm-methods.R functions.R utils.R zzz.R
biocViews: Bioinformatics, CopyNumberVariants, SNP, GeneticVariability,
        Visualization
Packaged: 2012-04-01 05:28:45 UTC; biocbuild
Built: R 2.15.0; i386-pc-mingw32; 2012-04-01 10:57:39 UTC; windows
Archs: i386, x64
