Visualizations for copy number alterations

Documentation for package ‘SNPchip’ version 2.2.0

arrangeSideBySide	Helper function to arrange two trellis objects side by side on a grid.
centromere	Coordinates of centromere
chromosomeAnnotation	chromosome annotation
cytoband	Start and stop sites of cytoband
plotIdiogram	Plots idiogram for one chromosome
xypanel	A panel function for plotting copy number versus physical position
xyplot	Plot copy number and physical position for a set of genomic intervals.
xyplot-method	Plot copy number and physical position for a set of genomic intervals.
xyplot2	Plot copy number and physical position for a set of genomic intervals.
xyplot2-method	Plot copy number and physical position for a set of genomic intervals.