Qualitiy Control of Gated Flow Cytometry Experiments

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Documentation for package ‘QUALIFIER’ version 1.0.2

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QUALIFIER-package QUALIFIER: A package that provides automated flow data quality assessment based on gated cell populations
db Create a list of 'qaTask' objects
description,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
formula,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
getData,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
getName,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
getPop,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
getQAStats Calculate and extract the statistics from the gating hierarchies.
getQAStats-method Calculate and extract the statistics from the gating hierarchies.
getQAStats-methods Calculate and extract the statistics from the gating hierarchies.
makeQaTask Create a list of 'qaTask' objects
outlier.cutoff outliers detection functions
outlier.norm outliers detection functions
outlier.t outliers detection functions
outlierFunctions outliers detection functions
plot plot the statistics for a particular cell population of a group of samples
plot-method plot the statistics for a particular cell population of a group of samples
plotType,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
proportion.outliers.mle outliers detection functions
proportion.outliers.robust outliers detection functions
qaCheck Perform the quality assessment for the qaTask object
qaCheck-method Perform the quality assessment for the qaTask object
qaCheck-methods Perform the quality assessment for the qaTask object
qaCheckList Create a list of 'qaTask' objects
qaID,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
qaLevel,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
qaPreprocess a wrapper function
qaReport create quality assessment report
qaReport-method create quality assessment report
qaReport-methods create quality assessment report
qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
qaTask-class 'qaTask': a class for storing important information of flow cytometry data quality assessment task
qoutlier outliers detection functions
qpar 'qaTask': a class for storing important information of flow cytometry data quality assessment task
qpar-method 'qaTask': a class for storing important information of flow cytometry data quality assessment task
qpar<- 'qaTask': a class for storing important information of flow cytometry data quality assessment task
qpar<--method 'qaTask': a class for storing important information of flow cytometry data quality assessment task
QUALIFIER QUALIFIER: A package that provides automated flow data quality assessment based on gated cell populations
rlm Perform the quality assessment for the qaTask object
saveToDB Calculate and extract the statistics from the gating hierarchies.
show,qaTask 'qaTask': a class for storing important information of flow cytometry data quality assessment task
tubesevents Create a list of 'qaTask' objects