25f7fdcf45767e6854bdfc5b29708c34 *DESCRIPTION
20978a35d209da6b725101fe384aa8c1 *INDEX
64d9790415018bebc941e345979749f2 *Meta/Rd.rds
35cfc1d5d9c9eb923bd9a9981d3a21c5 *Meta/data.rds
7eb6c6b89fa12fe75235b9ce87d31d44 *Meta/hsearch.rds
d22adcdac45347117fb9e3f5e99d19ba *Meta/links.rds
980616604aeef04fb23cc8ab336d00e2 *Meta/nsInfo.rds
0fb71d0c7adfd902a6a87260ffab9573 *Meta/package.rds
e6f657342b548f59f86dd808ff9771fb *Meta/vignette.rds
c1d1c4dc4a7a90e48b366c4d79a87150 *NAMESPACE
6e7baf3ea6f24837f16cea56423f7717 *NEWS.Rd
240d28d145138a75831809e31a480bad *R/GWASTools
42551885b1e662deb5379492ef98cec2 *R/GWASTools.rdb
b3217f602606ff9871dd0a709e878927 *R/GWASTools.rdx
4a17bd862eefb22195861076a5992211 *data/HLA.hg18.RData
9281ae3bcdb734fe2eef3864fdf86537 *data/HLA.hg19.RData
be3415feeadb01dced4d9bccbdc27f7e *data/centromeres.hg18.RData
8c32910bfafa2a4aa98f67f00d97bb27 *data/centromeres.hg19.RData
9fd45148cc848551e5440f6391ab576a *data/pcaSnpFilters.hg18.RData
b502d11aa52549e9755e2c3ac38d9b6e *data/pcaSnpFilters.hg19.RData
7d28e2d309e5d3f63e4c96e7f075cad2 *data/pseudoautosomal.hg18.RData
da82a7366ee48a4dafd447e1b120fccf *data/pseudoautosomal.hg19.RData
18961c4ae51dd493fb7a17b490f430fa *data/relationsMeanVar.RData
af154e76ea8418ee62ac4e8346dc41f9 *doc/DataCleaning.R
acb9839a83328d81f3e385ebe362ebe6 *doc/DataCleaning.Rnw
65e149c7af8706d83511d4b91db42f70 *doc/DataCleaning.pdf
77d16747ffc9a55e4480ef3b555bfafb *doc/index.html
3b2a18464421490c873aad6c8bffe632 *help/AnIndex
a186513b9995a4dd8d69b0eac1cbc492 *help/GWASTools.rdb
d820e355bb9777c48b47565e3a1d888a *help/GWASTools.rdx
2c0fa72a8d3109d6c924e53d95cb7a64 *help/aliases.rds
f1180d7075e7c9a950195cfdefc663cf *help/paths.rds
902e6eb7272f2bb1c56f342ebedeb866 *html/00Index.html
444535b9cb76ddff1bab1e1865a3fb14 *html/R.css
e3b54d351220730d601e300dfc9589aa *unitTests/BAFfromClusterMeans_test.R
d00b35111cad21912c242af66fd70464 *unitTests/BAFfromGenotypes_test.R
a30f92dd6e0a00e7cb6a833a416e745d *unitTests/GenotypeData_test.R
c6f9428a027a52be005e5d7ecee983cb *unitTests/IntensityData_test.R
128c7369072ea96ed44ecb6a496a0917 *unitTests/MatrixGenotypeReader_test.R
9ccea588eadf2dc2efdf62e9e29486d7 *unitTests/NcdfGenotypeReader_test.R
fa559973b54d74e1066b436e2fb691f5 *unitTests/NcdfIntensityReader_test.R
47c7dc43aa5a421167ace27da45bdbb4 *unitTests/NcdfReader_test.R
67a1ce964be00d7180723bba030a3031 *unitTests/ScanAnnotationDataFrame_test.R
31212b6719dbe4e1556ea81d2dc3550d *unitTests/ScanAnnotationSQLite_test.R
9f19613050c5c0df376ef2a92d9a772a *unitTests/SnpAnnotationDataFrame_test.R
1a80659c616a9893e849e04c84cf5bb8 *unitTests/SnpAnnotationSQLite_test.R
d6b2af6d420d8648d72c49b6d589c0f4 *unitTests/alleleFrequency_test.R
8d89dc9ff9002416ca4cfcb4d072fc54 *unitTests/allequal_test.R
57398362ee4a3abeff7db5717d36828d *unitTests/anomDetectBAF_test.R
dc188b62be9fa7f6cb0cb54f5ecff29b *unitTests/apartSnpSelection_test.R
6eb9da30c01a2a500f79d0d061c50c2e *unitTests/batchChisqTest_test.R
136ed11a971891aaa450b90283c59bab *unitTests/batchFisherTest_test.R
171c24a2a4e4038d73a642c6c6150b6c *unitTests/chromIntensityPlot_test.R
455025b9f5aa6051cf84cb7f0ea01a5a *unitTests/convertNcdfGds_test.R
3858c66f9a145e78b8022b086f308f69 *unitTests/duplicateDiscordanceAcrossDatasets_test.R
81a42e879c6dda5e5a4bd6441a3e2e8f *unitTests/duplicateDiscordance_test.R
905598138226fdc90c7e5bd3f553c024 *unitTests/findBAFvariance_test.R
30a56126cc8657ec956f96c87da4177e *unitTests/getobj_test.R
f8a135a1fcf3c0f383a1e60670baa28e *unitTests/hetByScanChrom_test.R
5a9474736f609b96247bc0b0a61342d6 *unitTests/hetBySnpSex_test.R
0d7c0a72a92af6b3a3b91a5958cb6324 *unitTests/ibdPlot_test.R
a15a23f3e5d975b61df1eb5b7c2c93b6 *unitTests/meanIntensityByScanChrom_test.R
41a5a01831ecd828cda4af98007c366e *unitTests/missingGenotypeByScanChrom_test.R
a3205fde64f25df663b03c972970a489 *unitTests/missingGenotypeBySnpSex_test.R
68d9419d296f7595d112f8bd3bacebe0 *unitTests/ncdfAddData_test.R
bc096c941f8988ada867da3569d0113b *unitTests/ncdfAddIntensity_test.R
a1c8356641bcd4f779689b5eeb96b5f2 *unitTests/ncdfCheckGenotype_test.R
e7b61a3490a9cefbe815328cd64c8d7f *unitTests/ncdfCheckIntensity_test.R
818c940bb80589e44e8e2684eba6f964 *unitTests/ncdfCreate_test.R
5455e8e38e61067930deec3f769e4b51 *unitTests/ncdfSetMissingGenotypes_test.R
b27b180ad052d8be3b5dd15f47a8c43d *unitTests/ncdfSubset_test.R
f8768ab3b9359a33c0a05bb6626214d5 *unitTests/plinkUtils_test.R
96ce42cffea1f48d7a72f03fa48ec01e *unitTests/pseudoautoIntensityPlot_test.R
86e76d76ab0a662c41685d45623639b0 *unitTests/qualityScoreByScan_test.R
64a23402e8040c62d420a6205dbec0df *unitTests/qualityScoreBySnp_test.R
87cce94804e502b6ffda8222fbdf875a *unitTests/saveas_test.R
