Package: DOSE
Type: Package
Title: Disease Ontology Semantic and Enrichment analysis
Version: 1.2.1
Author: Guangchuang Yu, Li-Gen Wang
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin
    and Wang respectively for measuring DO semantic similarities, and
    hypergeometric test for enrichment analysis.
Depends: R (>= 2.10)
Imports: methods, plyr, qvalue, stats4, AnnotationDbi, DO.db,
        org.Hs.eg.db, igraph, scales, ggplot2, graphics
Suggests: clusterProfiler, GOSemSim, ReactomePA
License: Artistic-2.0
biocViews: Bioinformatics, Annotation
Collate: 'AllGenerics.R' 'barplot.R' 'ClassDOParams.R' 'cnetplot.R'
        'combineMethods.R' 'DOSE-package.R' 'doSim.R'
        'enrich.internal.R' 'enrichDO.R' 'geneSim.R' 'ICMethods.R'
        'utilities.R' 'WangMethod.R' 'zzz.R'
Packaged: 2012-04-22 06:02:51 UTC; biocbuild
Built: R 2.15.0; ; 2012-04-22 10:03:56 UTC; windows
